ELIXIR - Data Science At NIH
ELIXIRA European distributed infrastructure forbiological informationPablo Roman-Garcia, Andrew Smith, Joanna McEntyre, Serena Scollen , NormanMorrison , Rita Hendricusdottir, Niklas Blombergwww.elixir-europe.org
ELIXIR - Distributed infrastructure for life scienceImplemented throughNational ELIXIR Nodes20 membersBuild on: local bioinformatics on national strengths andprioritiesConsolidates Europe’s nationalcentres, services, and corebioinformatics resourcesData and services: simplifies access,ensures long-term sustainabilitySingle, coordinated infrastructure able to scale with the challengewww.elixir-europe.org
ELIXIR StructureFive technical platforms forCompute, Data, Tools andInteroperabilityComplemented by four usecases for marine metagenomics, rare diseases,human data and plantssciences
ExamplesELIXIR AAI(Authentication andAuthorisationInfrastructure)ELIXIR Tools andService RegistryMichel DumontierEuropeanGenome-phenomeArchiveBioschemas
Global initiatives and collaborations ELIXIR Core data resources ELIXIR Beacon project TeSS – ELIXIR Training portal ELIXIR Interoperability backbone
Global initiatives and collaborations ELIXIR Core data resources ELIXIR Beacon project TeSS – ELIXIR Training portal ELIXIR Interoperability backbone
Process for selecting ELIXIR Core Data ResourcesDurinx C, McEntyre J, Appel R et al. 2016 [version 1; referees: 2]F1000Research 2016, 5:2422 (doi: 10.12688/f1000research.9656.1)
Global initiatives and collaborations ELIXIR Core data resources ELIXIR Beacon project TeSS – ELIXIR Training portal ELIXIR Interoperability backbone
Beacons: public data discovery web-serviceDo you have informationabout the allele “C atposition 32,936,732 onchromosome 13?”Yes / No( optional metadataabout the allele)Do you have informationabout the allele “C atposition 32,936,732 onchromosome 13?”Beacon X: YesBeacon Y: NoBeacon Z: No beacon-network.org/
ELIXIR and Beacons Funding to aid implementation of the Beacontechnology within ELIXIR nodes ELIXIR Authentication and AuthorizationInfrastructureAccessible to internet usersAccessible to bona fide researchersAuthorized – signed agreement neededwww.elixir-europe.org/beacons
Global initiatives and collaborations ELIXIR Core data resources ELIXIR Beacon project TeSS – ELIXIR Training portal ELIXIR Interoperability backbone
TeSS – open to everyone TeSS is a repository of metadata for training materials and events The primary focus of TeSS is on ELIXIR resources and nodes ELIXIR’s TeSS and BD2K’s BigDataU collaboration
Global initiatives and collaborations ELIXIR Core data resources ELIXIR Beacon project TeSS – ELIXIR Training portal ELIXIR Interoperability backbone
ELIXIR Interoperability backbone – FAIR principles
A web-based, curated and searchable portal thatmonitors the development and evolution of standards,their use in databases and the adoption of both in datapolicies, to inform and educate the user community
Other collaborations in InteroperabilityCompact Identifiers Resolution
Interoperability Backbone OrganisationCurrent Working Groups – LeadsCarole Goble (UK)Helen Parkinson etagenomicsPlantsToolsRare DPersonalNormanMorrison (UK)John HancockMannie Corpas(UK)Marco Roos (NL)Josep Ll. Gelpi (ES)Niclas Jareborg (SE)Alex Mitchell(EBI)Richard Finkers(NL)Rachel Thompson(RD-CONNECT)Jordi Rambla (ES)Morris Swertz (NL)Rafa C Jimenez (ELIXIR CTO), Carole Goble and Helen Parkinson
ELIXIR at BD2K All Hands Niklas Blomberg (ELIXIR Director) Panel about New Models for Open Science EmergingAround the Globe. Susanna. A. Sansone (ELIXIR UK) An Informative and Educational Service for CommunityDeveloped Standards - Biosharing The DataMed DATS Model, Annotated With Schema.org Hennin Hermjakob (ELIXIR – EMBL) Poster – REACTOME Omics Discovery Index
THANK YOU!ELIXIR receives funding from the European Commission withinthe research infrastructure programme of Horizon 2020
ELIXIR - Distributed infrastructure for life science. 20 members Implemented through National ELIXIR Nodes. Build on: local bioinformatics on national strengths and priorities Consolidates Europe’s natio
Early praise for Programming Elixir Dave Thomas has done it again. Programming Elixir is what every programming book aspires to be. It goes beyond the basics of simply teaching syntax and mechanical examples. It teaches you how to think Elixir. Bruce Tate CTO, icanmakeitbetter.com. Author.
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NIH Peer Review Author: Jaya Raman, Ph.D. Subject: NIH Peer Review Presentation Keywords: NIH Peer Review; NIH Peer Review Presentation; Scientific Review Office; NIDCR, NIH; National Instiute of Health; National Insitute of Dental and Craniofacial Research; Eunice Kennedy Shriver National Institute of Child Health and Human Development; NICHD;
Elixir Data Designer for extracting, merging and processing data from a variety of datasources, either to generate direct data output (for example, Excel files or database records), or to feed data into Elixir
and to review all NIH Toolbox measures as they relate to the needs of young children. NIH TOOLBOX APP Released in 2015, the NIH Toolbox iPad app takes advantage of portable technology and advanced software to provide users with a exible and easy-to-use NIH Toolbox test administration and data collection system. App
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