PAG 2012 - Illumina

W332Studying functional genomics with next-generation sequencingIlluminaW333Routine digital methylation profiling of population cohorts with bisulfite padlock probesUniversity of California, San DiegoW355Applications of genome sequencing for Peanut improvementUniversity of California, Davis GenomeCenterW361Identification of SNP haplotypes and prospects of association mapping in WatermelonGus R. Douglass Institute andDepartment of Biology, West VirginiaState UniversityW363Germplasm management in the post-genomics era—A case study with LettuceUSDA- ARSW426Physical map and shotgun sequence of the Aegilops tauschii genomeUniversity of California, DavisW427Towards a reference sequence of the Bread Wheat chromosome 3BINRA GDECW439Genomic diversity and sequence-based association analyses in Medicago truncatulaUniversity of Minnesota, Saint PaulW442Transcriptome of common Bean (Phaseolus vulgaris) through RNA-seq: Nodulation,symbiotic nitrogen fixation, transcription factorsCentro de Ciencias GenomicasUniversidad Nacional Autónoma deMéxico, CuernavacaW448High resolution TranSNiPtomics: Gene expression and SNP detection in high throughput andhigh resolution by “Massive Analysis of cDNA Ends” (MACE)GenXPro-GmbHW469Development of a high-density SNP genotyping panel as a community resource for geneticanalysis in OatUSDA-ARSW474Sequencing and genotyping in a complex genome: Current status and future possibilitiesIlluminaW475Identification of fertility restorers for S Male-Sterile Maize: Beyond PPRsUniversity of Florida, GainesvilleW512Assembly of huge plant genomes from WGS dataUniversity of Maryland, College ParkW528Population genomics of vegetative phenology in PopulusWest Virginia University, MorgantownW530Chilling requirement and bloom date in Peach: Genetic and genomic approaches fordeciphering a complex gene networkClemson UniversityW539The Potato Aphid transcriptome and salivary secretomeUniversity of California, RiversideW588Search for genomic footprints of divergent selection from whole genome sequencing offour experimental lines of Broiler ChickensDepartment of Animal and Food Sciences,University of Delaware, NewarkW627Genomes to genes: Comparative genomic analysis in PrunoideaeWashington State University, PullmanW628The Potato genome sequencing project 2 years on: Comparison of strategies with relatedprojects and perspectives for the future of the world’s 3rd food cropWageningen-URW629Just genes–well mostly: Genomic enrichment for Sugarcane genic regionsThe University of QueenslandW644Sequencing and comparison of the genomes of Petunia inflata and Petunia axillarisNorthern Illinois UniversityW646Towards completion of the genome that makes Hot PepperSeoul National UniversityW659Towards early-stage chilling tolerance for European energy sorghumJustus-Liebig University Giessen,Department of Plant BreedingW680Re-sequencing and hybrid assembly strategy of two nematode resistant Beta vulgaristranslocation linesChristian Albrechts University of KielW686Genomic and epigenetic characterization of Sugarcane hybrids and wild relativesIBqM/Universidade Federal do Riode JaneiroW694Whole genome re-sequencing of Pigs and Wild Boar reveals unexpected signatures invariation related to biogeography, domestication, and hybridizationWageningen University, Animal Breedingand Genomics CentreW695Identification of QTLs and genes related to immune response to Poly (I:C) stimulation in aDuroc-Erhualian F2 Pig populationHuazhong Agricultural UniversityW696Genome-wide association of a novel Porcine stress-syndrome to dystrophinUSDA-ARS, USMARCW718Sequencing the obligate Oomycete plant pathogen, Bremia lactucaeUniversity of California,Davis Genome CenterW720Genome sequence for the Apicomplexan Sarcosystis neuronaUniversity of Georgia, Institute ofBioinformatics, Center for Tropical andEmerging Global Diseases & Departmentof Genetics

postersProgram No.TitlePrimary OrganizationP0001ARK-Genomics Centre for Comparative and Functional GenomicsThe Roslin Institute, University ofEdinburghP0007Enhancing whole genome, transcriptome and metagenomic sequencing withnext-generation sequencing platformsUniversity of Illinois W. M. Keck Center,UrbanaP0009Repeat reduction in Illumina libraries prior to sequencing using duplex-specific nucleaseUniversity of California, Davis GenomeCenterP0010Rapid and efficient methods for preparing rRNA-depleted and directional Plant RNA-Seq librariesEpicentre (an Illumina company)P0014Resequencing in a mapping populationSouthern Illinois University CarbondaleP0015Exploring the genome diversity of Mycorrhizal Fungi–A JGI Sequencing Project updatePennsylvania State University,University ParkP0020An evolutionary aspect for two subspecies of Oryza sativa and three wild accessions ofOryza rufipogonMitsubishi Space Software Co., Ltd.P0021Analysis of the Oryza nivara genomeInstitute of Plant Biology,National Taiwan UniversityP0022Reference-guided de novo genome assembly of the Indica Type Rice Variety IR 64 usingshort-read sequencingInternational Rice Research InstituteP0026Gene content, loss, conservation and genetic variation among Triticum aestivumgroup 7 chromosomesAustralian Centre for PlantFunctional GenomicsP0027Sequence-ready, physical maps of chromosomes 1D, 4D, and 6D of hexaploid WheatKansas State University, ManhattanP0029Whole genome shotgun sequencing and assembly to access the gene rich portion of thegenome of Lolium perenne LTeagascP0030De novo genome sequencing of perennial Ryegrass (Lolium perenne)Department of Molecular Biology andGenetics, Aarhus UniversityP0032A gene expression atlas of developing Oat seeds for enhancing nutritional compositionUSDA-ARSP0033A whole genome reference sequence of AmborellaUniversity of Florida, GainesvilleP0040De novo assembly of the Carrot mitochondrial genomeUniversity of Wisconsin, MadisonP0042Unraveling Chickpea transcriptome for gene discovery and marker development usingnext generation sequencing technologiesNational Institute of PlantGenome ResearchP0043Using genomic approaches to study an economic important Weedy PlantConyza canadensisUniversity of Tennessee, KnoxvilleP0044Gossypium arboreum genome assembly using a sequence-based physical mapNational Center for Genome ResourcesP0049Identification and characterization of microRNAs from Eugenia unifloraLaboratory of Genomes and PlantPopulation, Center of Biotechnology,Federal University of Rio Grande do SulP0050Genome size evolution in the genus Genlisea—From half of the A. thaliana genome tothe twenty-foldMax Planck Institute for Plant BreedingResearch (MPIPZ)P0051Identification of rhizome-specific transcripts, putative TFs and SNPs in Ginger usingnext-generation sequencing technologyInstitute of Biological Chemistry,Washington State University, PullmanP0054Alfalfa genome sequencing efforts: Strategies and progressNoble FoundationP0055Next generation sequencing of Medicago truncatula plastid genomesRutgers University,Waksman Institute of MicrobiologyP0061RNA-seq reveals extensive diversity among Potato genomes and functional complexityof organ and transgene specific defense mechanisms against the Late Blight Pathogen(Phytopthora infestans)Department of Plant Pathology,University of MinnesotaP0062Transcriptome characterization for genome annotation and functional genomics In Pyrus sppNanjing Agricultural UniversityP0064Comparative genomic analysis in PrunoideaeWashington State University, PullmanP0067Sequencing and analysis of the Rotylenchulus reniformis transcriptomeInstitute for Genomics, Biocomputing, andBiotechnology, Mississippi State UniversityP0070Resequencing of recombination inbred line populations reveals the landscape of SNPdistribution and recombination patterns in SoybeanUniversity of Missouri, ColumbiaP0071Towards a first draft of the octoploid Strawberry genome sequenceIRTA, Centre for Research in AgriculturalGenomicsP0078Branching out–Expanding the sequencing of the mammalian treeBroad InstituteP0080Variation detection in the Bos taurus genome using novel in-solution exome captureCofactor Genomics

P0082Whole-genome sequencing identifies multiple protein function affecting variants within QTLregions for pulmonary hypertension syndrome in ChickenWageningen University, Animal Breedingand Genomics CentreP0083Analysing the Buffalo genomeParco Tecnologico PadanoP0084Marine Microbial Eukaryote Transcriptome Sequencing Project (MMETSP)National Center for Genome Resources(NCGR)P0085Challenges and opportunities for improving the Atlantic Cod genome assembly andannotationUniversity of OsloP0086De novo transcriptome assembly of the plant-parasitic nematode Aphelenchoides fragariaeSchool of Agricultural, Forest, andEnvironmental Sciences, Clemson UniversityP0089De novo assembly of Campylobacter fetus subspecies and biovars genomes reveal uniquefeatures in pathogenecity islandsCentre for Comparative Genomics,Murdoch UniversityP0104Validation of VERSA Mini NGLP for automated library preparation with the Illumina platformAurora BiomedP0106Automation of library preparation for high-resolution ChIP-seq profilingUniversity of California, DavisP0112Long-span, mate-pair pNGS-FOS libraries and applicationsLucigen CorporationP0114Sequences of 14,600 gene-bearing minimal tiling path BACs of Morex BarleyUniversity of California, RiversideP0117Global allele-specific expression reveals the molecular basis of general combining abilityState Key Laboratory of Hybrid Rice,College of Life Science, Wuhan UniversityP0121Using Sequenom to study gene expression and gene loss in natural and synthetic polyploidgenerations (Tragopogon, Asteraceae)University of Florida, GainesvilleP0124Identification of differentially expressed microRNAs associated with PRRSV infectionNorth Carolina State University, RaleighP0125Genotyping-by-sequencing (GBS) in SheepAgResearch Ltd. Invermay AgriculturalCentreP0126Transcriptome sequencing of Water Buffalo embryosParco Tecnologico PadanoP0127Transcript profiling differentiates healthy control, sub-clinical and clinical Johne's Diseasein Dairy CattleNational Center for Genome ResourcesP0129SNP-calling in the Zebrafish Mutation ProjectWellcome Trust Sanger InstituteP0130The Zebrafish Mutation Project: Systematic genome-wide identification of knockout allelesin the Zebrafish using whole exome enrichment and Illumina sequencingWellcome Trust Sanger InstituteP0133New NEBNext reagents and adaptors for NGS library preparationNew England BiolabsP0137Phylogenomics of organelles using Illumina sequence dataUniversity of Missouri, ColumbiaP0150Genotyping-by-sequencing for mapping phenotypic traits in T. cacaoStanford UniversityP0170Using multiplexed massively parallel sequencing to aid genetic conservation andrestoration in Port-Orford-cedarUSDA Forest ServiceP0182Mass genotyping by sequencing technologyEureka GenomicsP0184Application of random sequence-based genotyping (rSBG) in cropsKeyGeneP0189SNP mining in the genome of BarleyLeibniz Institute of Plant Genetics andCrop Plant Research (IPK)P0192Characterising genetic variation in Lolium perenne breeding populations using a genotypeby sequencing approachDepartment of Molecular Biology andGenetics, Aarhus UniversityP0199Genome-wide SNP development and validation for Allotetraploid GossypiumTexas A&M UniversityP0201A 1536-plex Oil Palm SNP set for genetic mapping and identification of markers associatedwith Oil Palm fruit colourMalaysian Palm Oil BoardP0202High-density SNP mapping on Peach (Prunus persica L. Batsch) populationsUniversity of California, DavisP0203Genome-wide assessment of SNPs in Peanut using Illumina (Solexa) sequencingTexas Tech UniversityP0205High density genetic mapping of SunflowerDepartment of Plant Biology,University of GeorgiaP0206The genetics of bra

W627 Genomes to genes: Comparative genomic analysis in Prunoideae Washington State University, Pullman W628 . P0015 exploring the genome diversity of Mycorrhizal Fungi–A JGI Sequencing Project update . Genetics, Aarhus University ()