I. PERSONAL INFORMATION Nanette R. Boyle Department Of Chemical And .
I. PERSONAL INFORMATION Nanette R. Boyle Colorado School of Mines 1613 Illinois St. Golden, CO 80401 www.metabolism.mines.edu II. EDUCATION August 2009 May 2004 Department of Chemical and Biological Engineering Office: (303) 384 – 2024 Mobile: (602) 769 – 3757 Email: nboyle@mines.edu Ph.D. Chemical Engineering Purdue University, West Lafayette, IN. Advisor: Professor John A. Morgan Thesis: Stoichiometric Modeling of Photoautotrophic Metabolism B.S.E. Chemical Engineering, Minor in Business Arizona State University, Tempe, AZ III. EMPLOYMENT HISTORY Jan 2022 – June 2022 Visiting Professor/Fulbright Scholar Swammerdam Institute for Life Sciences University of Amsterdam Amsterdam, The Netherlands Aug 2021 – Dec 2021 Visiting Scientist Gevo, Inc. Strain Development Englewood, CO Aug 2021 – Present Associate Professor Chemical and Biological Engineering Colorado School of Mines Golden, CO Aug 2013 – July 2021 Assistant Professor Chemical and Biological Engineering Colorado School of Mines Golden, CO Aug 2013 – July 2015 William K. Coors Development Chair Chemical and Biological Engineering Colorado School of Mines Golden, CO Sept 2011 – Aug 2013 Postdoctoral Fellow Advisor: Professor Ryan T. Gill Chemical and Biological Engineering University of Colorado Boulder Boulder, CO
Sept 2009 – Aug 2011 IV. Postdoctoral Fellow Advisor: Professor Sabeeha S. Merchant Chemistry and Biochemistry University of California, Los Angeles Los Angeles, CA FUNDING AND SUPPORT (Over 2.7 million to Boyle Lab) ACTIVE SUPORT 2021 – 2022 2021 – 2022 2018 - 2023 2018 – 2023 2017 – 2022 Alfred P. Sloan Foundation/Scialog “Bricks from the Ocean: Hybrid Microbial-Electrochemical Mineralization of CO2.” Nanette Boyle (PI) 55,000 Alfred P. Sloan Foundation/Scialog “Solar-Augmented Direct Air Capture of Methane Using Methanotrophic Bacteria.” Nanette Boyle (PI) 55,000 U.S. Department of Energy Early Career Program “Enabling Predictive Metabolic Modeling of Diurnal Growth Using a Multi-Scale MultiParadigm Approach.” Nanette Boyle (PI) 750,000 National Institutes of Health R33/R61 “A systems biology approach to identifying the mechanisms of sex hormone induced thromboembolism in pre-menopausal women.” Keith Neeves (PI), Nanette Boyle (Co-PI) 3,329,780 Total; 907,066 to the Boyle Lab U.S. Department of Energy Biosystems Design to Enable Next Generation Biofuels and Bioproducts “Systems Analysis and Engineering of Biofuel Production in Chromochloris zofingiensis, an emerging model green alga.” Krishna Niyogi (PI), Nanette Boyle (CoI) Approximately 8 million total, 616,314 to the Boyle Lab COMPLETED AT MINES 2016 – 2021 National Science Foundation Energy for Sustainability “SusChEM: Direct CO2 to limonene conversion in a model cyanobacterium” Nanette Boyle (PI) 319,373 2015 – 2016 Colorado School of Mines REMRSEC Seed Grant “Engineering Cyanobacteria for the Production of Sustainable Nylon Monomers” Nanette Boyle (PI), John Dorgan (CoPI) 100,000 total; 80,000 to Boyle Lab 2014 Colorado Center for Biofuels and Biorefining “Replisome Engineering in Synechococcus for Improved Recombineering Efficiencies” Nanette Boyle (PI) 5,737
V. PUBLICATIONS 1Equal contributions *Corresponding author Boyle lab grad/postdoc Boyle lab undergrad BOOK CHAPTERS 1. HR Aucoin, JJ Gardner, NR Boyle*. “Omics of Chlamydomonas for Biofuel Production”. Lipids in Plant and Algae. Edited by Yuki Nakamura and Yonghua Li-Beisson. Cham. Springer International Publishing; 2016. 319-25979-6 18 2. WE Sinclair and NR Boyle*. “Chapter 14: Photosynthetic Platform Strain Selection: Strain Selection Considerations and Large Scale Production Limitations.” Biotechnologies for Biofuel Production and Optimization, 1 ed. Edited by: Carrie Eckert and Cong Trinh. Amsterdam. Elsevier; 2016. B9780444634757000145 3. NR Boyle, AA Shastri, JA Morgan. “Chapter 8: Network Stoichiometry.” Plant Metabolic Networks. Edited by J. Schwender. New York. Springer; 2009. https://www.springer.com/us/book/9780387787442 PEER REVIEWED JOURNAL ARTICLES Submitted 1. DM Newman1, CL Sake1, AJ Metcalf, FK Davies and NR Boyle*. “Characterizing Photosynthetic Biofuel Production: Isotopically non-stationary 13C metabolic flux analysis (INST-13CMFA) on limonene producing Synechococcus sp. PCC 7002.” 2. M Meagher1, AJ Metcalf1, and NR Boyle*. “Genome-Scale Metabolic Model Accurately Predicts Fermentation of Glucose by Chromochloris zofingiensis.” .449518v1 Published 3. AJ Metcalf and NR Boyle*. “Rhythm of the Night (and Day): Predictive metabolic modeling of circadian growth in Chlamydomonas.” mSystems. https://doi.org/10.1128/msystems.00176-22 4. CL Sake, AJ Metcalf, M Meagher, Jorge Di Paola, KB Neeves, and NR Boyle*. “Isotopically Nonstationary 13C Metabolic Flux Analysis in Resting and Activated Human Platelets.” Metabolic Engineering. S1096717621001932?via%3Dihub 5. AJ Metcalf, A Nagygyor and NR Boyle*. “Rapid Annotation of Photosynthetic Systems (RAPS): automated algorithm to generate genome-scale metabolic networks from algal genomes”. Algal Research. 2020, v50. https://doi.org/10.1016/j.algal.2020.101967 6. CL Sake, DM Newman and NR Boyle*. “Evaluation of Quenching Methods for Metabolite Recovery in Photoautotrophic Synechococcus sp. PCC 7002”. Biotechnology Progress. 2020. e3015. 002/btpr.3015 7. JJ Gardner, Bri-Mathias S. Hodge, and NR Boyle*. “Multiscale Multiobjective Systems Analysis (MiMoSA): an advanced metabolic modeling framework for complex systems”. Nature Scientific Reports. 2019, 9 (1) 16948. https://www.nature.com/articles/s41598-019-53188-0 8. CL Sake, AJ Metcalf, and NR Boyle*. “The Challenge and Potential of Photosynthesis: Unique Considerations for Metabolic Flux Measurements in Photosynthetic Microorganisms.” Biotechnology Letters. 2018, 41 (1) 35-45. 18-2622-4 9. JJ Gardner and NR Boyle*. “The use of a genome-scale metabolic network reconstruction to predict fluxes and equilibrium composition of N-fixing versus C-fixing cells in a diazotrophic cyanobacterium, Trichodesmium erythraeum.” BMC Systems Biology. 2017, 11(1). 1186/s12918-016-0383-z 10. NR Boyle*, N Sengupta and JA Morgan. “Metabolic Flux Analysis of Heterotrophic Growth in Chlamydomonas reinhardtii”. PLOS One. 2017, 12(5). https://journals.plos.org/plosone/article?id 10.1371/journal.pone.0177292
11. M Liberatore, BN Peterson, T Nottoli, JM McCulloch, RE Jinkerson, NR Boyle, MC Posewitz. “Effectiveness of cationically modified cellulose polymers for dewatering algae.” Separation Science. 2016, 51 (5) P: 892-898. 395.2015.1121278 12. CJ Ramey, Á Barón-Sola, HR Aucion, NR Boyle*. “Genome Engineering in Cyanobacteria: Where we are and where we need to go.” ACS Synthetic Biology. 2015, 4(11) p:1186-1196. 0043. **This manuscript was also the cover image for this issue** 13. RI Zeitoun, AD Garst, GD Degen, G Pines, TY Glebes, NR Boyle and RT Gill. “Multiplexed Tracking of the Evolutionary Trajectory of Combinatorial Genome Engineered Populations”. Nature Biotechnology. 2015, 33 p:631 – 637. https://www.nature.com/articles/nbt.3177?proof true&draft collection 14. S Schmollinger1, T Mühlhaus1, NR Boyle1, IK Blaby, D Casero, T Mettler, J Kropat, F Sommer, D Hemme, M Stitt, M Pellegrini, M Schroda, SS Merchant. “Systems analysis of nitrogen sparing mechanisms in Chlamydomonas reinhardtii”. The Plant Cell. 2014, 26(4) 1410 – 1435. http://www.plantcell.org/content/26/4/1410 15. IK Blaby, AG Glaesener, T Mettler, S Fitz-Gibbon, S Gallaher, B Liu, NR Boyle, J Kropat, M Stitt, S Johnson, C Benning, M Pellegrini, D Casero, SS Merchant. “Systems-level analysis of N-starvation induced TAG accumulation in a Chlamydomonas starchless mutant”. The Plant Cell. 2013, 25(11) p: 4305-4323. http://www.plantcell.org/content/25/11/4305 16. NR Boyle, TS Reynolds, R Evans, M Lynch, and RT Gill. “Recombineering to Homogeneity: Extension of Multiplex Recombineering to Large-Scale Genome Editing”. Biotechnology Journal. 2013, 8(5) p: 515522. iot.201200237 17. LBA Woodruff, NR Boyle, RT Gill. “A directed, genome-wide approach to select for improved ethanol production in a heterologous Escherichia coli production platform”. Metabolic Engineering. 2013, 17(0) p: 1-11. S1096717613000098?via%3Dihub 18. EC Spindler, NR Boyle, REW Hancock, RT Gill. “Genome-wide identification of genes conferring energy related resistance to a synthetic antimicrobial peptide (Bac8c)”. PLoS ONE. 2013, 8(1): e55052. https://journals.plos.org/plosone/article?id 10.1371/journal.pone.0055052 19. NR Boyle, RT Gill. “Tools for Genome-Wide Strain Design and Construction”. Current Opinion in Biotechnology. 2012, 23(5): p 666-671. S0958166912000249?via%3Dihub 20. NR Boyle, MLD Page, B Liu, IK Blaby, J Kropat, S Cokus, S Karpowicz, D Casero, J Shaw, A HongHermesdorf, S Johnson, C Benning,M Pellegrini, A Grossman, S Merchant. “Three acyltransferases and a nitrogen responsive regulator are implicated in nitrogen starvation-induced triacylglycerol accumulation in Chlamydomonas reinhardtii”. Journal of Biological Chemistry. 2012, 287(19): p 1581115825. http://www.jbc.org/content/287/19/15811.long 21. NR Boyle, JA Morgan. “Computation of Metabolic Fluxes and Efficiencies for Biological Carbon Dioxide Fixation”. Metabolic Engineering. 2011, 13(2): p 150-158. S1096717611000061 22. NR Boyle, JA Morgan. “Flux balance analysis of primary metabolism in Chlamydomonas reinhardtii”. BMC Systems Biology. 2009, 3(1):4. [Highly Accessed] https://doi.org/10.1186/1752-0509-3-4 VI. INVITED SEMINARS “From Green to Red: Quantifying Metabolism Across the Kingdoms.” Carnegie Mellon University. Chemical Engineering Department. April 28, 2022. Pittsburgh, PA. “From Green to Red: Quantifying Metabolism Across the Kingdoms University of Amsterdam. Biosystems Data Analysis. April 22, 2022. Amsterdam, The Netherlands. “The Rhythm of the Night (and Day): Predictive Metabolic Modeling of Diurnal Growth in Chlamydomonas”. Konya Food and Agriculture University. Molecular Microbiology Seminar. March 13, 2022. Konya, Turkey.
“The development and use of metabolic models to quantify fluxes in biological systems”. University of Amsterdam. Plant Hormone Biology. March 1, 2022. Amsterdam, The Netherlands. “Data-Driven Multiscale Metabolic Modeling of Diurnal Growth in the Model Green Alga in Chlamydomonas.” Metabolic Pathway Analysis Conference. August 3, 2021. Knoxville, TN “Data-Driven Multiscale Metabolic Modeling of Diurnal Growth in the Model Green Alga in Chlamydomonas.” Ludwig Maximilians Universität München. Frontiers in Chloroplast Research. July 23, 2021. “Data-Driven Multiscale Metabolic Modeling of Diurnal Growth in the Model Green Alga in Chlamydomonas.” Iowa State University. Chemical and Biological Engineering. April 22, 2020. “Data-Driven Multiscale Metabolic Modeling of Diurnal Growth in Chlamydomonas.” DOE Genomic Science Program Annual PI Meeting. February 22 – 24, 2021. “Next Generation Metabolic Models for Photosynthesis.” Colorado State University. Chemical and Biological Engineering. January 30, 2020. Fort Collins, CO. “Metabolic Modeling of Chlamydomonas reinhardtii During Diel Growth.” KeyGene USA. February 6, 2019. “Next Generation Metabolic Models for Photosynthesis.” Kansas State University. Chemical Engineering. September 4, 2019. Manhattan, KS. “Enabling Predictive Metabolic Modeling of Diurnal Growth Using a Multi-Scale Multi-Paradigm Approach.” DOE Genomic Sciences Program Annual PI Meeting. February 25-27, 2019. Tyson’s Corner, VA. “Enabling Predictive Modeling of Photoautotrophic Growth Using a Multi-Scale Multi-Paradigm Approach.” Tulane University Chemical and Biomolecular Engineering. February 8, 2019. New Orleans, LA. “Next Generation Metabolic Models.” Revolutionizing Agriculture with Synthetic Biology. The Banbury Center. December 4th, 2018. Lloyd Harbor, NY. “Enabling More Predictive Modeling of Photoautotrophic Growth Using a Multi-Scale Multi-Paradigm Approach.” AICHE Annual Meeting. Advances in Metabolic Engineering of Autotrophic Organisms. November 1, 2018. Pittsburgh, PA. “Development of advanced multi-scale multi-paradigm metabolic models to investigate cellular physiology.” ISPR Conference on Microbial Photosynthesis. Vancouver, Canada. August 9-12, 2018. “Green Factories: Engineering Cyanobacteria to Replace Petroleum Products.” University of Wyoming Chemical Engineering. October 24, 2016. Laramie, WY. “Biofuels: Past, Present and Future” Colorado School of Mines Nuclear Engineering. November 4th, 2015. Golden, CO. “Temporal Transcriptomics of C. reinhardtii during nitrogen induced TAG accumulation” Colorado State University Plant Supergroup. September 26th, 2014. Fort Collins, CO. “Systems and Synthetic Biology: reading, editing and writing genomes.” Colorado School of Mines Chemical and Biological Engineering. March 18th, 2013. Golden, Colorado. “Systems and Synthetic Biology: reading, editing and writing genomes.” University of Pittsburgh Chemical and Petroleum Engineering. March 4th, 2013. Pittsburgh, Pennsylvania.
“Systems and Synthetic Biology: reading, editing and writing genomes.” Arizona State University School for Engineering of Matter, Transport and Energy. February 14th, 2013. Tempe, Arizona. “Systems and Synthetic Biology: reading, editing and writing genomes.” Arizona State University School of Life Science. January 28th, 2013. Tempe, Arizona. “Systems and Synthetic Biology: reading, editing and writing genomes.” Georgia Institute of Technology Chemical and Biomolecular Engineering. January 23rd, 2013. Atlanta, Georgia. “Desperately Seq-ing Nitrogen on the Way to Biodiesel.” 2011 Photosynthesis Gordon Research Conference. June 16th, 2011. Davidson, NC. “TAG, You’re It! Using Flux Analysis and Transcriptomics to Identify Key Steps in Triacylglycerol (TAG) Production.” Missouri S&T University Chemical and Biochemical Engineering. April 21st, 2011. Rolla, MO. “TAG, You’re It! Using Flux Analysis and Transcriptomics to Identify Key Steps in Triacylglycerol (TAG) Production.” Notre Dame University Chemical and Biomolecular Engineering. February 21st, 2011. South Bend, IN. “Algae Derived Biodiesel: A Systems Biology Approach”. Colorado State University Chemical and Biological Engineering. February 10th, 2011. Fort Collins, CO. “Stoichiometric Modeling of Metabolism in the Green Algae Chlamydomonas reinhardtii.” Faculty Lecture Award, Purdue University Chemical Engineering. April 29th, 2010. West Lafayette, IN. VII. CONFERENCE PRESENTATIONS AND POSTERS ORAL PRESENTATIONS Boyle lab grad/postdoc Boyle lab undergrad The speaker is indicated in bold font 2021 AJ Metcalf, and NR Boyle. “Data-Driven Multiscale Metabolic Modeling of Diurnal Growth in the Model Green Alga in Chlamydomonas.” Chlamydomonas 2020 1 Conference. August 30, 2021. Île de Embiez, France. AJ Metcalf, and NR Boyle. “Data-Driven Multiscale Metabolic Modeling of Diurnal Growth in the Model Green Alga in Chlamydomonas.” Metabolic Pathway Analysis Conference. August 3, 2021. Knoxville, TN. CL Sake, KB Neeves and NR Boyle. “13C-Metabolic Flux Analysis in Resting and Thrombin Activated Platelets.” 2020 International Society on Thrombosis and Haemostasis (ISTH) Congress. Virtual Meeting. July 17 – 21. ** This work was highlighted on a daily news cast called ISTH Congress Daily and in the Highlights of the ISTH Congress (the most impactful science from the congress)** 2020 M Meagher, AJ Metcalf, and NR Boyle. "Analysis of genome-scale metabolic model of Chromochloris zofingiensis". AIChE Annual Meeting. November 15 - 20, 2020. San Francisco, CA. AJ Metcalf and NR Boyle. "Integrating Circadian Gene Expression Data into Metabolic Models to Improve Dynamic Flux Modeling." AIChE Annual Meeting. November 15 - 20, 2020. San Francisco, CA. CL Sake, KB Neeves and NR Boyle. “13C-MFA of Human Platelet Metabolism.” 2020 AIChE Annual Meeting. November 15 - 20, 2020. San Francisco, CA.
2019 JJ Gardner, BS Hodge and NR Boyle. “Multiscale Multiobjective Systems Analysis (MiMoSA): An advanced modeling framework for complex systems.” AIChE Annual Meeting. Orlando, FL. November 2019. AJ Metcalf, M Meagher, A Nagygyor, W Prentice, E Bournia, S Ramsey and NR Boyle. “Genome-Scale Metabolic Model of Chromochloris, an emerging model organism for sustainable fuel production.” AIChE Annual Meeting. Orlando, FL. November 2019. C Sake, K Neeves and NR Boyle. “Metabolomics for investigating the effects of estrogen on human platelets.” AIChE Annual Meeting. Orlando, FL. November 2019. JJ Gardner, AJ Metcalf, M Meagher and NR Boyle. “Developing more predictive metabolic models for diurnal growth of algae.” 9th International Conference on Algal Biomass, Biofuels & Bioproducts. June 17 – 19, 2019. Boulder, CO. JJ Gardner, BMS Hodge and NR Boyle. “MultIscale MultiObjective Systems Analysis (MIMOSA): an advanced metabolic modeling framework for complex systems.” 13th Workshop on Cyanobacterium. June 17-19, 2019. Boulder, CO. CL Sake, S Becker, D Newman, FK Davies and NR Boyle. “Quantifying Photosynthetic Carbon Fluxes for Limonene Production in Synechococcus sp. PCC 7002.” ACS Spring Meeting. March 31 – April 4, 2019. Orlando, FL. 2018 2016 JJ Gardner and NR Boyle. “Development of Advanced Multi-Scale Multi-Paradigm Metabolic Models to Investigate Cellular Physiology.” AIChE Annual Meeting. Pittsburgh, PA. October 28 – November 2, 2018. JJ Gardner and NR Boyle. “Metabolic model of Trichodesmium erythraeum a marine diazotroph.” AIChE Annual Meeting. San Francisco, CA. November 2016. JJ Gardner and NR Boyle. “Advanced multiscale modeling of a nitrogen fixing cyanobacterium.” ACS Spring Meeting. San Diego, CA. March 2016. 2015 2014 JJ Gardner and NR Boyle. “Modeling Population Fluctuations in Nutrient Limited Environments”. AIChE Annual Meeting. Salt Lake City, UT. November 2015. HR Aucoin and NR Boyle. “Elucidation of the Homologous recombination mechanism in Synechococcus sp. PCC 7002.” Colorado Center for Biorefining and Biofuels. Fall 2014 Meeting. 2012 HR Aucoin and NR Boyle. “Replisome Engineering in Synechococcus for improved recombineering efficiencies.” Colorado Center for Biorefining and Biofuels. Spring 2014 Meeting. NR Boyle, S Lynch, R Zeitoun, RT Gill. “Multiplex Recombineering-Enabled Genome Editing Tools.” AIChE Annual Meeting. October 29, 2012. Pittsburg, PA. 2011 2010 NR Boyle, D Casero, M Pellegrini and S Merchant. “Temporal Transcriptomics of Chlamydomonas reinhardtii During Triacylglycerol Accumulation.” ACS Spring Meeting. March 30, 2011. Anaheim, CA. NR Boyle, NR, D Casero, M Pellegrini, and S Merchant. “Temporal transcriptomics of Chlamydomonas reinhardtii during nitrogen starvation using RNA-seq.” AIChE Annual Meeting. November 10, 2010. Salt Lake City, UT.
2006 NR Boyle, and JA Morgan. “Flux Balance Analysis of Chlamydomonas reinhardtii: A predictive tool for investigating metabolic responses to nitrogen limitation.” Western Photosynthesis Conference. January 8, 2010. Pacific Grove, CA. NR Boyle and JA Morgan. “Stoichiometric Modeling of Eukaryotic Photoautotrophic Metabolism in Chlamydomonas reinhardtii.” American Institute of Chemical Engineers Annual Meeting; November 17, 2006. San Francisco, CA. POSTER PRESENTATIONS Boyle lab grad/postdoc Boyle lab undergrad 2021 CL Sake, KB Neeves and NR Boyle. “Quantifying Transient Metabolic Fluxes Using Stable Isotopes, Mass Spectrometry, and Computational Modeling.” AIChE Annual Meeting. November 7-11, 2021. Boston, MA. AJ Metcalf and NR Boyle. "Integrating Large Scale Systems Biology Data with Metabolic Modeling: A Chemical Engineering PhD Seeking Challenges in Computational Biology." AICHE Annual Meeting. Nov 7-11, 2021. Boston MA. MF Meagher, and NR Boyle. “Development of a Custom 3D Printed Paddle Wheel in a Flat Panel Photobioreactor for Improved Algal Growth.” International Conference on the Cell and Molecular Biology of Chlamydomonas reinhardtii. Ile dez Embiez, France, Aug 29 – Sept 3, 2021. MF Meagher, AJ Metcalf, and NR Boyle. "Genome-Scale Metabolic Model Accurately Predicts Fermentation of Glucose By Chromochloris Zofingiensis." Metabolic Engineering 14. July 11-14. Virtual. AJ Metcalf and NR Boyle. "Data Driven Advanced Metabolic Modeling of Diurnal Growth in the Model Green Alga Chlamydomonas reinhardtii." Metabolic Engineering 14. July 11-14. Virtual. M F Meagher, Y Hu, MS Roth, AJ Metcalf, K Niyogi, TR Northern, and NR Boyle. “Metabolic Model of Chromochloris zofingiensis, an Emerging Model Green Alga for Sustainable Fuel Production.” U.S. Department of Energy, Genomic Sciences Program Annual Principal Investigator Meeting. Feb 22-24 2021. Virtual. AJ Metcalf and NR Boyle. "Advanced Metabolic Modeling of Diurnal Growth in Chlamydomonas reinhardtii." U.S. Department of Energy, Genomic Sciences Program Annual Principal Investigator Meeting. Feb 22-24 2021. Virtual. 2020 AJ Metcalf, Y Hu, MS Roth, M Meagher, TR Northen, and NR Boyle. "Genome-scale Metabolic Model of Chromochloris zofingiensis, an Emerging Model Green Alga for Sustainable Fuel Production." DOE Genomic Sciences Program (GSP) Annual Principal Investigator (PI) Meeting. February 23-26, 2020. Washington, DC. AJ Metcalf and NR Boyle. "Enabling Predictive Metabolic Modeling of Diurnal Growth Using a Multi-Scale Multi-Paradigm Approach." DOE Genomic Sciences Program (GSP) Annual Principal Investigator (PI) Meeting. February 23-26, 2020. Washington, DC. 2019 AJ Metcalf, M Meagher, A Nagygyor, W Prentice, E Bournia, S Ramsey and NR Boyle. “RAPS: Rapid Annotation of Photosynthetic Systems.” AIChE Annual Meeting. Orlando, FL. November 2019.
AJ Metcalf, A Nagygyor and NR Boyle. “RAPS: Rapid Annotation of Photosynthetic Systems.” 9th International Conference on Algal Biomass, Biofuels & Bioproducts. June 17 – 19, 2019. Boulder, CO. M Meagher, AJ Metcalf, W Prentice, SA Ramsey, E Bournia, NR Boyle. “Genome-scale metabolic model of Chromochloris, an emerging model organism for sustainable fuel production.” 9th International Conference on Algal Biomass, Biofuels & Bioproducts. June 17 – 19, 2019. Boulder, CO. SN Becker, DM Newman, CL Sake, FK Davies and NR Boyle. "13C-MFA in a Fast Growing Limonene Producing Cyanobacterium." AIChE Rocky Mountain Student Regional Conference. April 5-6, 2019. Golden, CO. JJ Gardner, BMS Hodge and NR Boyle. “Investigating Nutrient Cycling Mechanisms in a Filamentous Cyanobacterium Using Advanced Multi-Scale Multi-Paradigm Metabolic Models.” ACS Spring Meeting. March 31 – April 4, 2019. Orlando, FL. AJ Metcalf, A Nagygyor and NR Boyle. “RAPS: Rapid Annotation of Photosynthetic Systems.” ACS Spring Meeting. March 31 – April 4, 2019. Orlando, FL. AJ Metcalf, M Meagher, A Naygyor, SA Ramsey, W Prentice and NR Boyle. “Genome-scale metabolic model of Chromochloris, an emerging model organism for sustainable fuel production.” ACS Spring Meeting. March 31 – April 4, 2019. Orlando, FL. SN Becker, DM Newman, CL Sake, FK Davies and NR Boyle. "13C-MFA in a Fast Growing Limonene Producing Cyanobacterium." Society of Women Engineers WE Local Conference. March 15-16, 2019. Denver, CO. JJ Gardner and NR Boyle. “Enabling Predictive Metabolic Modeling of Diurnal Growth Using a MultiScale Multi-Paradigm Approach.” DOE Genomic Sciences Program Annual PI Meeting. February 25-27, 2019. Tyson’s Corner, VA. 2018 AJ Metcalf, W Prentice, SA Ramsey, A Nagygyor and NR Boyle. “Genome-scale Metabolic Model of Chromochloris zofingiensis, an Emerging Model Organism for Sustainable Fuel Production.” DOE Genomic Sciences Program Annual PI Meeting. February 25-27, 2019. Tyson’s Corner, VA. CL Sake, FK Davies and NR Boyle. “Photocatalytic Production of the Jet Fuel Limonene in Synechococcus sp. PCC 7002.” AIChE Annual Meeting. Pittsburgh, PA. October 28 – November 2, 2018. AJ Metcalf and NR Boyle. “RAPS: Rapid Annotation of Photosynthetic Systems.” AIChE Annual Meeting. Pittsburgh, PA. October 28 – November 2, 2018. AJ Metcalf and NR Boyle. “Genome-Scale Metabolic Model of Chromochloris, an Emerging Model Organism for Sustainable Fuel Production.” AIChE Annual Meeting. Pittsburgh, PA. October 28 – November 2, 2018. AJ Metcalf and NR Boyle. “Genome-Scale Metabolic Model of Chromochloris, an Emerging Model Organism for Sustainable Fuel Production.” 5th Conference on Constraint-Based Reconstruction and Analysis (COBRA). Seattle, WA. October 14-16, 2018. AJ Metcalf and NR Boyle. “Metabolic Modeling of Chromochloris zofingiensis.” ISPR Conference on Microbial Photosynthesis. Vancouver, Canada. August 9-12, 2018. CL Sake, FK Davies and NR Boyle. “Photocatalytic Production of the Jet Fuel Limonene in Synechococcus sp. PCC 7002.” ISPR Conference on Microbial Photosynthesis. Vancouver, Canada. August 9-12, 2018. CL Sake, FK Davies and NR Boyle. “Tracking Carbon Flux in a Photocatalytic Limonene Production Strain.” Metabolic Engineering 12. Munich, Germany. June 24-28, 2018.
JJ Gardner and NR Boyle. “Investigating Cellular Physiology of a Marine Cyanobacterium Using a Multi-Scale Multi-Paradigm Metabolic Model.” Metabolic Engineering 12. Munich, Germany. June 24-28, 2018. 2017 JJ Gardner and NR Boyle. “Multi-paradigm Multi-scale Metabolic Modeling of a Nitrogen Fixing Cyanobacterium with Two Distinct Metabolic Modes.” AIChE Annual Meeting. Minneapolis, MN. October 2017. CL Sake, FK Davies and NR Boyle. “Photocatalytic Production of a Jet Fuel Precursor: Limonene.” AIChE Annual Meeting. Minneapolis, MN. October 2017. JJ Gardner and NR Boyle. “Metabolic Modeling of a Multicellular Nitrogen Fixing Cyanobacterium.” ACS Spring Meeting. San Francisco, CA. April 2017. 2016 2015 JJ Gardner and NR Boyle. “Metabolic Modeling of a Nitrogen Fixing Cyanobacterium.” 12th Workshop on Cyanobacteria. Tempe, AZ. May 2016 HR Aucoin, WE Sinclair and NR Boyle. “Development of advanced genome engineering tools for a model cyanobacterium.” ACS Spring Meeting. San Diego, CA. March 2016. HR Aucoin, WE Sinclair, C Witherell, and NR Boyle. “Molecular toolkit development for a model Cyanobacterium.” ACS Spring Meeting. Denver, CO. March 2015. JJ Gardner and NR Boyle. “Understanding population fluctuations in marine environments.” ACS Spring Meeting. Denver, CO. March 2015. VIII. TEACHING EXPERIENCE Spring 2021 Instructor, Mines Chemical and Biological Engineering Course: CBEN 360 – Bioprocess Engineering (Undergraduate) Spring 2020 Instructor, Mines Chemical and Biological Engineering Course: CBEN 698 – Systems Biology (Graduate) Fall 2019 Instructor, Mines Chemical and Biological Engineering Course: CBEN 360 – Bioprocess Engineering (Undergraduate) Fall 2019 Instructor, Mines Chemical and Biological Engineering Course: CBEN 460 – Biochemical Process Engineering (Undergraduate) Fall 2019 Instructor, Mines Chemical and Biological Engineering Course: CBEN 461 – Biochemical Process Engineering Laboratory (Undergraduate) Fall 2018 Instructor, Mines Chemical and Biological Engineering Course: CBEN 360 – Bioprocess Engineering (Undergraduate) Fall 2018 Instructor, Mines Chemical and Biological Engineering Course: CBEN 460 – Biochemical Process Engineering (Undergraduate) Spring 2018 Instructor, Mines Chemical and Biological Engineering Course: CBEN 308 – Heat Transfer (Undergraduate)
IX. Spring 2017 Instructor, Mines Chemical and Biological Engineering Course: CBEN 308 – Heat Transfer (Undergraduate) Fall 2016 Instructor, Mines Chemical and Biological Engineering Course: CBEN 518 – Reaction Kinetics and Catalysis (Graduate) Spring 2016 Instructor, Mines Chemical and Biological Engineering Course: CBEN 308 – Heat Transfer (Undergraduate) Fall 2015 Instructor, Mines Chemical and Biological Engineering Course: CBEN 518 – Reaction Kinetics and Catalysis (Graduate) Fall 2014 Instructor, Mines Chemical and Biological Engineering Course: CBEN 518 – Reaction Kinetics and Catalysis (Graduate) Fall 2014 Co-Instructor, Mines Chemical and Biological Engineering Course: CBEN 398 – Genetic Engineering Survey Course (Undergraduate) Fall 2013 Instructor, Mines Chemical and Biological Engineering Course: CBEN 518 – Reaction Kinetics and Catalysis (Graduate) Spring 2012 Instructor, CU Boulder Chemical and Biological Engineering Course: CHEN 4803 – Metabolic Engineering (Undergraduate) Spring 2012 Instructor, CU Boulder Chemical and Biological Engineering Course: CHEN 5803 – Metabolic Engineering (Graduate) Fall 2008 Teaching Assistant, Purdue University Chemical Engineering Course: CHE 435 – Chemical Engineering Laboratory I (Undergraduate) Lead Instructor: Fabio Ribeiro Spring 2006 Teaching Assistant, Purdue University Chemical Engineering Course: CHE 378 – Heat and Mass Transfer (Undergraduate) Lead Instructor: R. Neal Houze SELECTED HONORS AND AWARDS 2021 – 2022 2020 – 2022 2018 2013 2011 2010 2006 – 2009 Fulbright Scholar, The Netherlands Scialog Fellow for Negative Emissions Science U.S. Department of Energy (DOE) Early Career Award NIH Ruth L. Kirschstein National Research Service Award (NRSA) Purdue Graduate Student Research Publication Award (2011) Inaugural Purdue University Chemical Engineering Faculty Lecture Award NSF Graduate Research Fellowship (2006 – 2009) X. STUDENTS AND MENTORSHIP Postdoctoral Scholars Angel Sola-baron (2014 – 2015) Ph.D. Students Joseph Gardner (2014 – 2019) Currently employed at JoynBio Cara Sake (2016 – Present) Alexander Metcalf (2017 – Present) Michelle Meagher (2018 –
FUNDING AND SUPPORT (Over 2.7 million to Boyle Lab) ACTIVE SUPORT 2021 - 2022 Alfred P. Sloan Foundation/Scialog "Bricks from the Ocean: Hybrid Microbial-Electrochemical Mineralization of CO 2." Nanette Boyle (PI) 55,000 2021 - 2022 Alfred P. Sloan Foundation/Scialog "Solar-Augmented Direct Air Capture of Methane Using .
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