Undergraduate Handbook - Marlin

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The FieldThe MajorBiology is the science of life. The vast scope of its subjectmatter makes biology an extremely diverse field of study.This diversity stems not only from the tremendous variety oflife forms with which we share our planet, but also from themultiple levels of organization available for biologicalinvestigation. Given an organism, a biologist might choose toinvestigate how it behaves, how it fits into its ecosystem, themechanisms by which its genes shape its appearance, what itsancestors were like, how its cells divide, how it grows anddevelops, or how it derives energy from nourishment.Biological inquiry encompasses perspectives from theplanetary to the submicroscopic.The wide array of biological perspectives is reflected inthe many subdisciplines of the field. Genetics, anatomy,physiology, ecology, ethology, botany, neurobiology,systematics, molecular biology, developmental biology,paleontology, and cell biology are just a few of the multitudeof specializations that, taken together, compose biology.Given the plethora of approaches that coexist under thebiological umbrella, a casual observer might believe thatbiology is an intellectually fragmented and diffuse endeavor.Fortunately, biology, in all of its glorious diversity, is unifiedby a few grand ideas. In particular, the theory of evolutionprovides a conceptual framework that draws together thefar-flung threads of biological thought.Like other scientists, biologists use the scientific methodto develop explanations for the patterns and processes thatthey observe in the natural world. The practice of biologythus involves both systematic observation, often aided bysophisticated instruments, and experimentation. Biologistsmay work in laboratories or in the field; some of the bestbiological research combines data gathered in both settings.The Biology major is open to all students with an interest inbiology. The course requirements for the major emphasizefundamental scientific concepts while allowing students totailor a program to their own interests. All majors arerequired to complete a core sequence that includes basic mathand science courses and a two-semester introduction tobiology. The elective portion of the degree is more flexibleand is intended to allow students to select a personalizedarray of courses while sampling the breadth of biology.Career OpportunitiesFor many biology majors, undergraduate studies arepreliminary to the pursuit of an advanced degree that willlead to a career as a medical doctor, veterinarian, academic,or scientist. A graduate degree is not, however, required topursue a career related to biology. A bachelors degree inbiology can lead to employment in the large and growingbiotechnology, health care, or pharmaceutical industries.Many openings in these dynamic, high-tech fields require adegree in the life sciences. Biology majors are likewise wellprepared for careers as secondary-school science teachers.Certain government agencies, including the National ParkService and the Environmental Protection Agency, alsoregularly hire biology graduates, as do private environmentaland conservation organizations. Employers of all typesrecognize that a person with a science degree is likely to becomfortable with logical, quantitative thinking.The FacultyThe Biology faculty includes more than thirty distinguishedscientists, many of whom are very prominent in their fields.Most of these researchers regularly invite selectedundergraduates to join their research teams. The faculty isproud of the many research opportunities that it is able toextend to undergraduates, but may take even more pride in itscommitment to teaching. Many excellent teachers fill theranks of the Biology faculty, including four winners of theprestigious UMass Distinguished Teacher Award.TransfersCourses completed elsewhere and accepted for transfer creditmay substitute for some required courses. All postintroductory biology courses, however, must be completed inUMass Amherst.The MinorAn undergraduate minor in Biology requires successfulcompletion of at least 18 credits (all with grade of 'C' orbetter) from the Biological Sciences Core:1) Biol 151, 152, and 153 (lab) Intro Biology I and II2) Three additional Biology Department courses chosenfrom the list of approved courses* for the major (seepage 4), subject to the following stipulations.a) Each of the three courses must be from a differentsubject area (see page 4 for a list of courses in eacharea).b) No more than one of the three courses may also beused to satisfy the requirements of another major.c) Only 3-credit and 4-credit courses may be used.d) Only Biology Department courses may be used.e) All three courses must be taken at UMass Amherst.*Note that some courses on the list of courses approvedfor the major are restricted to Biology majors. Thesecourses are not available to students pursuing a minor.undergraduate handbook, page 2

Course requirementsHonorsHighly motivated and academically accomplished majorsmay choose an honors track. The honors track providesopportunities for close interaction with faculty, and forparticipation in original biological research.To be eligible for Departmental Honors, a student must bea member of the Commonwealth Honors College (for infoabout joining, see www.honors.umass.edu/joining-honorscollege). Honors College members who wish to enroll inDepartmental Honors should contact Gerry Downes or LynnAdler (the Biology honors coordinators). This is best doneduring the sophomore or junior years.The following academic requirements must be completedto graduate with Departmental Honors: One Biology honors course at any level with grade of Bor betterOne Biology honors course numbered 300 or higherwith grade of B or betterEither BIOL 499Y “Honors Research” and BIOL 499T“Honors Thesis” with grade of B or better in both, ORan Honors Project Seminar. Contact a Biology honorscoordinator to find out if any current seminars areaccepted for Biology departmental honors.DissectionThe laboratory component of some Biology courses includesthe examination and/or dissection of animals. For adescription of the use of animals in a particular course,contact the course instructor or the Biology UndergraduateOffice.Study AbroadStudents are encouraged to spend one or two semestersstudying abroad. Study abroad offers a valuable opportunityfor enrichment and to gain perspective on the field ofbiology.At least 67 credits, with a minimum grade of C- required incourses in the Math and Physical Sciences Core, and a minimumgrade of C in all other courses counted toward the majorrequirements.Note: students considering a double major should be sure to readthe stipulation described at the bottom of this page.A. Math and Physical Sciences Core (30 credits)1. PHYSIC 131 and 132 Introductory Physics;2. CHEM 111 and 112 General Chemistry;3. CHEM 261, 262, and 269 Organic Chem/Organic Lab;4. One of the following courses:STATISTC 240 Intro to Statistics;RES ECON 212 Intro Statistics/Life Science;5. One of the following courses:MATH 127 Calculus for Life & Social Sciences;MATH 128 Calculus for Life & Social Sciences;STATISTC 501 Methods of Applied Statistics;CMPSCI 121 Problem Solving with Computers.B. Biological Science Core (37 credits)1. BIOL 151, 152, and 153 (lab) Introductory Biology; Notes:1) Biology majors must achieve a grade of C or better in BIOL151, 152 , and 153 before additional Biology courses may betaken.2. BIOL 312 Writing in Biology.3. At least 25 additional credits in biological science coursesnumbered 200 or above. These credits must include:a) at least 13 credits in courses numbered 315 and above;b) at least one course related to plant biology and one courserelated to animal biology;c) at least two courses with a laboratory or field component;d) at least one course in four of the following five areas:Genetics and Molecular Biology, Cellular Biology andDevelopment, Physiology, Evolution and Biodiversity,Ecology and Behavior.The 25 additional credits may include up to 3 credits ofindependent study, up to 3 credits of teaching practicumin a Biology Department course, and up to 6 creditsfrom an off-campus internship enrolled though CareerServices. However, no more than 6 total credits fromthese sources (independent study, teaching practicum,internship) may be counted toward the 25 additionalcredits. Note that Biol 494LI does not count toward the25 additional credits.The 25 additional credits MUST be taken at UMass Amherst.Note that this stipulation means that we do not accept coursestaken in other departments at UMass Amherst (with theexception of the non-Biology UMass courses that are on thelist of approved courses), or at other colleges. (Exceptions:With advance approval from his or her advisor, a student maysubstitute 500-level courses taken in a UMass Amherstdepartment other than the Biology Department, Five Collegecourses, or courses taken as part of a study-abroad program.)undergraduate handbook, page 3

Elective courses for the biology coreThe following lists specify the courses that may be taken toward fulfillment of the biology core requirement. If a courseappears in more than one area, it may be used to fill only one area requirement.GENETICS and MOLECULARBIOLOGYBIOL 311 General Genetics (formerly BIOL 283)BIOL 284 Genetics Lab [LAB]BIOL 285 Cell & Molecular BiologyBIOL 379H Genomics and BioinformaticsBIOL 383H Gene and Genome Analysis [LAB] [PLANT]BIOL 397MH Cell & Molecular Biology Lab [LAB,PLANT]BIOL 484 Cancer GeneticsBIOL 486H Molecular Biology of Model Systems [LAB][PLANT]BIOL 497G Human Genome AnalysisBIOL 514 Population GeneticsBIOL 583 Advanced GeneticsBIOL 597GE Evolutionary GeneticsCELLULAR BIOLOGY andDEVELOPMENTBIOL 285 Cell & Molecular BiologyBIOL 397MH Cell & Molecular Biology Lab [LAB,PLANT]BIOL 475 Plant Cell Biology [PLANT]BIOL 477H Bioimaging [LAB]BIOL 523 Histology [LAB]BIOL 559 Cell and Molecular Biology IIBIOL 580 Developmental BiologyBIOL 582 From DNA to Diversity: Evolution andDevelopment of Animal FormANIMSCI 390E Fundamental Vert. Embryology [Lab]ANIMSCI 581 Cancer BiologyPHYSIOLOGYBIOL 288 Introductory PhysiologyBIOL 397N Neurobiology and Physiology Lab [LAB]BIOL 497AM Animal MovementBIOL 510 Plant Physiology [PLANT]BIOL 564 Human PhysiologyBIOL 566 Comparative Animal PhysiologyBIOL 568 EndocrinologyBIOL 572 NeurobiologyBIOL 597MN Modern Methods in NeurobiologyBIOL 597NB Developmental NeurobiologyBIOL 597NE The Neural Basis of Animal BehaviorANIMSCI 372 Animal DiseasesANIMSCI 421 Wildlife ReproductionANIMSCI 572 Infection and ImmunityEVOLUTION and BIODIVERSITYBIOL 273 Marine VertebratesBIOL 280 EvolutionBIOL 424 Marine BiologyBIOL 426 New England Flora [LAB][PLANT]BIOL 487H Tropical Field Biology [LAB] [PLANT]BIOL 514 Population GeneticsBIOL 521 Comparative Vertebrate Anatomy [LAB]BIOL 528 Principles of EvolutionBIOL 540 Herpetology [LAB]BIOL 542 Ichthyology [LAB]BIOL 544 Ornithology [LAB]BIOL 548 Mammalogy [LAB]BIOL 582 From DNA to Diversity: Evolution andDevelopment of Animal FormBIOL 597GE Evolutionary GeneticsBIOL 597PD Dimensions of Plant Diversity [LAB][PLANT]ENVIRSCI 515 Microbiology of the SoilECOLOGY and BEHAVIORBIOL 287 Introductory EcologyBIOL 421 Plant Ecology [LAB] [PLANT]BIOL 422H Experimental Methods in Ecology [LAB][PLANT]BIOL 426 New England Flora [LAB][PLANT]BIOL 487H Tropical Field Biology [LAB] [PLANT]BIOL 544 Ornithology [LAB]BIOL 550 Animal Behavior [LAB]BIOL 551 Animal CommunicationBIOL 596Z Amazon Aquatic Ecology [LAB]NRC 590AE Aquatic EcologyNRC 590IE Invasion EcologyNRC 590M Marine EcologyNRC 547 Global Change EcologyNRC 566 Restoration EcologyNRC 470 Ecology of Fish [Lab]MISCELLANEOUSBIOL 335 Topics in Plant Biology [PLANT]BIOL 401 Great Papers in BiologyBIOL 461 Vertebrate Collections Management[PLANT] Course that fulfills the “plant course” requirement.[LAB] Course that fulfills the “lab or field component” requirement.undergraduate handbook, page 4

CHECKLIST FOR BIOLOGY GRADUATION REQUIREMENTSMATH COURSES (all grades C- or better)TAKE ONE COURSE FROM GROUP A, AND ONE FROM GROUP Bgroup ASTAT 240 Intro to StatsRES ECON 212 Intro Stat/Soc SciMATH 127 Calculus Igroup BMATH 128 Calculus IISTAT 501 Methods of Applied StatsCMPSCI 121 Intro to Problem SolvingCannot sub Stat 111,Stat 140, or equivalentPHYSICAL SCIENCE COURSES (all grades C- or better)PHYSICS 131 and 132 Intro Physics I & IICHEM 111 and 112 General Chem I & IICHEM 261 and 262/269 Org Chem I & IIBIOLOGY COURSES (all grades C or better, except Biol 494LI, D or better)BIOL 151 and 152/153 Intro Biology I & IIBIOL 312 Writing in BiologyBIOL 494LI Life After Biology**Courses below this line must be from the approvedcourses list and must total 25 credits.Genetics COURSE#Cell COURSE#Physiol COURSE#Evolution COURSE#Ecol COURSE#other COURSE#other COURSE#other COURSE#other COURSE#other COURSE#other COURSE#total credits# CR200# CR315 (at least 13 CR must be 315 )must havefour of fiveanimal course?plant course?IE course**?two labs?grand totalundergraduate handbook, page 5

Integrative Experience for Biology majorsIn addition to the major requirements, all Biology majors must complete a University general education requirementknown as the Integrative Experience (IE). The IE should be completed in the junior or senior year. It has two components:1. Take Biology 494 LI, Life After Biology (1-cr seminar, offered every semester)2. Make sure that your upper-level elective courses include at least one of the following courses:Biology 383H Gene and Genome AnalysisBiology 421 Plant EcologyBiology 477H BioImagingBiology 487H Tropical Field BiologyBiology 514 Population GeneticsBiology 523 HistologyBiology 540 HerpetologyBiology 550 Animal BehaviorBiology 551 Animal CommunicationBiology 572 NeurobiologyResearch OpportunitiesOne of the great advantages of attending a major research institution like UMass is that you can get into a real, working lab and dosome research yourself. There’s no better way to learn how science is really done, and no better way of gaining an in-depthunderstanding of your favorite sub-discipline. If you’re considering a research career and want to get an idea of what a researcher’swork life is like, if you want a chance to explore biology outside of the classroom, or if you just want a richer scientific education,you really should look into getting some research experience.You can do research during the school year, either for credit (independent study), or as a paid job (funded by a faculty sponsor’sresearch grant). Funds are also awarded each year to twelve Junior Fellows (actually seniors with good academic track records). Thisprogram has a competitive selection process. Contact the Biology Undergraduate Office for more info.Useful contact informationBiology Undergraduate Office, 216 Morrill, 413-545-2287Call or stop by for info or to make an advising appointment.Or make an appointment online: https://umass.campus.eab.com.Bruce ByersUndergraduate Program Coordinatorbbyers@bio.umass.edu413-545-1236Meghan GersonBiology Advisormtgerson@bio.umass.edu413-577-2929Emily FlemingBiology Advisoretfleming@umass.eduSusan ClevengerBiology Undergrad Assistantsuec@bio.umass.edu413-545-2287Carrie HowardBiology Undergrad Assistantcahoward@bio.umass.edu413-545-1783Wilmore WebleyPreMed Directorwilmore@microbio.umass.eduCatherine EdenPreMed Advisorceden@cns.umass.eduFaith NussbaumPreMed Advisorfnussbaum@cns.umass.edu 413-545-3819Dean’s Office220 Morrillundergraduate handbook, page 6413-545-3819413-545-1969

Answers to questions about registrationWhat is registration?Each semester, students canselect courses for the followingsemester. Registration for Springsemester courses begins inNovember, and Fall semesterregistration begins late March. Allcourse-choosing is done on the web,using the SPIRE system.Why should I register early?Without question, promptregistration is the best way to ensurethat you get the courses that youwant. Every semester, some coursesget oversubscribed, including upperlevel courses. On the other side ofthe coin, some less-popular coursesmay be canceled if too few peopleregister. So, if you really want tohave as many choices as possible,register as soon as possible afteryour enrollment period begins. It’s agreat way to reduce your beginningof-the-semester anxiety. You’ll feela lot more relaxed if you arrive backon campus with a full schedule inhand.When can I register?Access begins first for seniors,and on various dates thereafter forjuniors, sophomores, and freshman.Look carefully at your record onSPIRE so that you know exactlywhen your registration period begins(look under ‘EnrollmentAppointment’). If you fail toregister as soon as possible, youmay find that you cannot get intoyour preferred courses.What do I need before I canregister?You need your SPIRE logon IDand password. Your password doesnot change from semester tosemester, so once you get it youdon’t have to worry about it anymore.What if I don’t have mypassword?To get your password, you’llhave to go to the OIT Help Desk(A109 Lederle) with a photo ID.The Biology department does nothave your password. Sorry.I need help choosing myclasses. Who’s my advisor?The Biology Department doesnot assign you an advisor; you getto choose one (students from othermajors should check with theirhome departments for advisingpolicies). It’s nice that you havesome choice in the matter, but thedownside is that you have to takethe initiative to get some advising.Luckily, it’s really easy to do. Justcall 545-2287 or visit Morrill 216.Tell us you’d like to make anappointment with an advisor. We’llset you up with someone whoseinterests seem to match yours. If allgoes well and you like your firstadvisor, you simply continue tomake your future advisingappointments with that person. Ifyou don’t hit it off with your firstadvisor, not to worry. Next time,just tell us that you’d like to trysomeone different. You can alsomake advising appointments onlineat https://umass.campus.eab.comYou can meet with an advisoranytime.Is other registration infoavailable on line?Yes. Check out the UndergraduateRegistrar’s web site atwww.umass.edu/registrar. This siteholds a wealth of information. Thefinal exam schedule, the academiccalendar, lots of “how to”information, and common questionsanswered (transcripts, transfercredits, etc., etc.). You can of coursealso connect to the SPIRE system atany time, and get access to yourschedule, grades, transcript,financial aid, and billinginformation.undergraduate handbook, page 7Is there a SPIRE trick forfinding General Educationcourses?If you need a Ged Ed course ina particular category, go to the“Search Schedule of Classes” page.Leave the “Subject” box blank andchange the “Session:” box toUniversity. Then scroll down to the“Gen Ed Category” box and choosethe category you need (e.g., HS fora history Gen Ed).Can I change my schedule?Once the registration periodbegins, you can change yourschedule any time, from anycomputer with internet access, untilaccess ends about two weeks afterthe beginning of the semester. Hereare a few tips to smooth the processfor you. If you are unable to make adesired change because acourse is full, keep trying.People are adding anddropping continually, sospaces can open up briefly atany time. Persistence oftenpays off. Always add before youdrop. Or better yet, use the“swap” function to replaceone class with another, orthe “edit” function to changelabs while remaining in thesame lecture. The momentyou drop a course, someoneelse can take your spot. Somake sure you’re in thecourse you want before youdrop anything. If you dropthe lab section of a coursewith a lab component, you’llautomatically be droppedfrom the lecture, too. If thecourse is full, you may beunable to get back in.

Answers to questions about registrationHow come I can’t register forsome courses using SPIRE?How do I sign up for independentstudy?A few cou

The Biology major is open to all students with an interest in biology. The course requirements for the major emphasize fundamental scientific concepts while allowing students to tailor a program to their own interests. All majors are required to complete a core sequence that includes basic math and science courses and a two-semester introduction to

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